WIMSi - Washington University Interpolated Methylation Signatures

A unsupervised method to find patterns of DNA methylation that associate with expression changes in genomic datasets.  A variation of this approach can be used to elucidate a list of genes potentially regulated by DNA methylation.

 

ME-Class - Methylation and expression classification

A supervised method to find genes with DNA methylation changes that associate with expression changes in genomic datasets.  

 

FastaMirs

A method to determine miRNA targets using RIP-Seq data.